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Multiphoton Mesoscope

  • Subcellular-Level Resolution over a Ø5 mm Field of View
  • High-Speed Functional Imaging Across Several Brain Regions Operating in Concert


Shown with Objective at -20° Rotation

US Patent 10,295,811

With a large field of
view (FOV), our Mesoscope
can simultaneously capture
multiple brain regions;
the black circle represents
the Ø5 mm FOV.

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Sam Tesfai
Imaging Systems General Manager

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Press Release

Several images on this webpage are taken from
and used here under a Creative Commons Attribution license.

Random Access Scanning
Click for Details

Random Access Scanning
Our mesoscope creates high-speed images following user-defined scan patterns that translate the field of view laterally and axially. By hopping between regions, coordinated activity across multiple brain regions can be visualized.


  • Enables Functional Imaging within a Ø5 mm Field of View
  • Scans can be Configured over Whole Field of View or over Multiple Non-Contiguous Regions
  • Microscope Body Enables ±20° Rotation Around Sample and Fine XYZ Motion
  • Remote Focusing Mirror for Fast Axial Control over 1 mm Travel Range
  • Enclosure Provides Large Working Volume for Specimen and Experimental Apparatus
  • Field of View can Move While Specimen Remains Fixed
  • Technology Used Under License from HHMI's Janelia Research Campus
  • Volume Imaging Technique Using Bessel Beams and Dual-Plane Focusing Module Add-Ons Available; See the Applications Tab

Range of Motion

  • -20° to +20° Rotation About the Objective Focus
  • 2" of Fine X Motion
  • 6" of Fine Y Motion
  • 2" of Fine Z Motion
  • X, Y, and Z Axes Rotate with the Objective
  • Remote Focusing Mirror Enables Fast Focusing Adjustments over 1 mm Range During Scans

Thorlabs' 2-Photon Random Access Mesoscope (2p-RAM, US Patent 10,295,811) provides subcellular resolution over an exceptionally large Ø5 mm field of view. Developed and commercialized in collaboration with Karel Svoboda's research laboratory at HHMI's Janelia Research Campus, this multiphoton mesoscope is designed for in vivo functional imaging of multiple spatially separated brain regions operating in concert. When imaging across user-defined, non-contiguous regions of interest within the field, near-video frame rates are possible; see the Applications tab. 

Our 2p-RAM is capable of two-photon random access scanning; see the image to the upper right. This system features a built-in remote focusing unit, which translates the focal plane over a 1 mm range. The remote focusing unit can be coordinated with the lateral scan unit, which is comprised of virtually conjugated mirrors and a resonant scanner, to enable both lateral and axial translation of the field during the measurement. The lateral scan unit can direct the excitation beam from region to region within the Ø5 mm field of view in ~6 ms. The mesoscope includes an objective that provides large excitation and collection NAs of 0.6 and 1.0, respectively. The scan path wavelength range of 900 - 1070 nm was chosen for optimal two-photon excitation of GFP and red fluorescent proteins, and is compatible with any tunable Ti:sapphire laser designed for multiphoton microscopy, such as Thorlabs' Tiberius® laser.

The mesoscope features motion control systems that permit the mesoscope body to move while the specimen remains fixed. The mesoscope body allows -20° to +20° rotation for the objective, as well as 2" of fine X motion, 6" of fine Y motion, and 2" of fine Z motion; just as with Thorlabs' Bergamo® II multiphoton microscope, X, Y, and Z rotate along with the objective. A multi-jointed periscope maintains the laser alignment over the entire range of motion. Since the study of awake, behaving specimens benefits from large working spaces, the mesoscope's enclosure leaves the surface of the optical workstation free for the experimental apparatus.

Tiberius Brochure Download 

Please send questions via our mesoscope contact form or call (703) 651-1700
to discuss this new technology with one of our imaging specialists.

Mesoscope Specifications
Scan Path Wavelength Range 900 - 1070 nm
Field of View Ø5 mm
Objective Excitation NAa 0.6
Collection NAa 1.0
Working Distance 2.7 mm (Minimum)b
Lateral Scan Unit 12 kHz Resonant Scanner + Virtually Conjugated Galvo Scanner Set
Scan Speed Field of View is Divided into 608-µm-Wide Vertical Stripes; Time per Scan Line is 42 µs
Scan Speed = 42 µs × Number of Stripes × Number of Scan Lines
Examplesc Low Resolution, Full Field of View:
4.3 Frames per Second (6.3 mm × 5.4 mm Area, 500 Scan Lines, 9 Stripes)
High Resolution, Multiple Regions of Interest:
9.5 Frames per Second (Four 600 µm × 600 µm Areas, 512 Scan Lines per Area, 1 Stripe per Area)
Scan Resolution Point Spread Function at λ = 970 nm: 0.61 µm Lateral FWHM, 4.25 µm Axial FWHM
Epi-Detection Two Ultrasensitive GaAsP PMTs
Range of Motion
Objective Rotation -20° to +20° Around Objective Focus; 0.1° Encoder Resolution
X 2" (50.8 mm); 0.5 µm Encoder Resolution
Y 6" (152.4 mm); 0.5 µm Encoder Resolution
Z Stepper Motor 2" (50.8 mm), 0.1 µm Encoder Resolution
Remote Focusing Mirror 1 mm Travel Range
  • These NAs are valid over the entire scan path wavelength range.
  • The mesoscope's remote focusing mirror can be used to translate the focal plane over a 1 mm range without movement of the objective or the specimen, allowing the specimen to be placed farther from the edge of the objective than 2.7 mm.
  • Both examples described here are shown in the Calcium Imaging video in the Applications tab.

Please send questions via our mesoscope contact form or call (703) 651-1700
to discuss this new technology with one of our imaging specialists.



Calcium Imaging
Developed and commercialized in collaboration with Karel Svoboda's research laboratory at HHMI's Janelia Research Campus, our 2-Photon Random Access Mesoscope (2p-RAM) is able to capture the activity of neurons across multiple regions of the brain with calcium imaging. Calcium imaging is a common technique used for tracking populations of neurons with calcium indicators. Unlike widefield microscopy, which has high light scattering and low contrast, two-photon microscopy provides the high resolution and improved contrast needed for in vivo calcium imaging. 

A low-magnification image from layer 2/3 cortex expressing GCaMP6f under the thy-1 promoter (GP 5.17 line), followed by four fields of view acquired at a higher resolution and frame rate. (Courtesy of Nicholas James Sofroniew, Daniel Flickinger, Jonathan King, and Karel Svoboda; Janelia Research Campus and Vidrio Technologies, Virginia, USA.)

Using the 2p-RAM, Svoboda's research team has demonstrated in vivo imaging with a specimen expressing the GCaMP6f calcium indicator. As shown in the video to the right and in the image below, the multiphoton mesoscope can image across user-defined, non-contiguous regions of interest within the field at near-video frame rates. For more details, please see the complete research paper.

Source: Sofroniew, N. J., Flickinger, D., King, J., & Svoboda, K. (2016). A large field of view two-photon mesoscope with subcellular resolution for in vivo imaging. ELife, 5. doi:10.7554/elife.14472

Random Access Scanning
Click to Enlarge

The mesoscope allows a user-defined number of regions of interest to be tracked within a single scan.
(Courtesy of Karel Svoboda, Janelia Research Campus, Virginia, USA.)


Dual-Plane Imaging
Building upon the work of Karel Svoboda's research laboratory, researchers at the Allen Institute for Brain Science have designed a dual-plane focusing add-on for our multiphoton mesoscope that creates a second excitation path, allowing for simultaneous imaging of two independent focal planes in the axial direction. This module can be added or removed from the system without any adjustments to the original mesoscope. The Allen Institute researchers performed a comparative study between the multiphoton mesoscope with and without the dual-plane focusing add-on, and found that the imaging throughput increased by a factor of 2. The videos below show in vivo calcium imaging with their dual-plane multiphoton mesoscope. For more details on the Allen Institute for Brain Science, please visit their website.

If you are interested in the dual-plane focusing add-on, please fill out our mesoscope contact form or call (703) 651-1700.

Source: Tsyboulski, D., Orlova, N., Lecoq, J., & Saggau, P. (2018). MesoScope Upgrade: Dual Plane Remote Focusing Imaging System for Recording of Ca2+ Signals in Neural Ensembles. Biophotonics Congress: Biomedical Optics Congress 2018 (Microscopy/Translational/Brain/OTS). doi:10.1364/translational.2018.jw3a.60

Excitatory Cells of an Slc17a7-IRES2-Cre;CaMkII-tTa;Ai93 Specimen in the Primary Visual Cortex (V1) and Lateromedial (LM) Areas; Imaged at 11 Hz Frame Rate per Plane, 400 µm FOV.
(Courtesy of Dmitri Tsyboulski, Natalia Orlova, Fiona Griffin, Sam Seid, Jersome Lecoq, and Peter Saggau; Allen Institute for Brain Science, Washington, USA.)

Vip Inhibitory Cells in the Primary Visual Cortex (V1), Lateromedial (LM), Anterolateral (AL), and Anteromedial (AM) Areas; Imaged at 11 Hz Frame Rate per Plane, 400 µm FOV.
(Courtesy of Dmitri Tsyboulski, Natalia Orlova, Fiona Griffin, Sam Seid, Jersome Lecoq, and Peter Saggau; Allen Institute for Brain Science, Washington, USA.)


Volumetric Imaging with Bessel Beams
In partnership with the Howard Hughes Medical Institute and Prof. Na Ji (University of California at Berkeley), Thorlabs offers a Bessel beam module for our multiphoton mesoscope. In vivo volume imaging of neuronal activity requires both submicron spatial resolution and millisecond temporal resolution. While conventional methods create 3D images by serially scanning a diffraction-limited Gaussian beam, Bessel-beam-based multiphoton imaging relies on an axially elongated focus to capture volumetric images. The excitation beam’s extended depth of field creates a 2D projection of a 3D volume, effectively converting the 2D frame rate into a 3D volumetric rate. 

As demonstrated in Ji’s pioneering work, this rapid Bessel beam-based imaging technique has synaptic resolution, capturing Ca2+ dynamics and tuning properties of dendritic spines in mouse and ferret visual cortices. The power of this Bessel-beam-based multiphoton imaging technique is illustrated below, which compares a 300 x 300 μm scan of a Thy1-GFP-M mouse brain slice imaged with Bessel (left) and Gaussian (right) scanning. 45 optical slices taken with a Gaussian focus are vertically stacked to generate a volume image, while the same structural features are visible in a single Bessel scan taken with a 45 μm-long focus. This indicates a substantial gain in volume-imaging speed, making this technique suitable for investigating sparsely labeled samples in-vivo.

If you are interested in the Bessel beam add-on, please fill out our mesoscope contact form or call (703) 651-1700.

Source: Lu R, Sun W, Liang Y, Kerlin A, Bierfeld J, Seelig JD, Wilson DE, Scholl B, Mohar B, Tanimoto M, Koyama M, Fitzpatrick D, Orger MB, and Ji N. "Video-rate volumetric functional imaging of the brain at synaptic resolution." Nature Neuroscience. 2017 Feb 27; 20: 620-628.

A single Bessel scan (left) captures the same structural information obtained from a Gaussian volume scan created by stacking 45 optical sections (right), reducing the total scan time by a factor of 45. The images show a brain slice scanned over a 300 μm x 300 μm area. Scan depth for the Gaussian stack is indicated by the scale bar. Sample Courtesy of Qinrong Zhang, PhD and Matthew Jacobs; the Ji Lab, Department of Physics, University of California, Berkeley.

Posted Comments:
gregory.gauvain  (posted 2017-05-30 17:01:41.7)
Hello, is it possible to buy the objective alone? Thanks. Gregory
nbayconich  (posted 2017-06-13 04:58:47.0)
Thank you for contacting Thorlabs. At the moment we are only selling the Multiphoton Mesoscope as a whole system. I will contact you directly with more information.
heuckerothr  (posted 2017-05-02 18:31:31.16)
I recognize that the multiphoton mesoscope is a new device. Any idea what it will cost? Thanks. Robert O. Heuckeroth
tfrisch  (posted 2017-05-03 11:21:07.0)
Hello, thank you for contacting Thorlabs. I have asked a Sales Representative to reach out to you with information about a quote.
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